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Address a number of `DeprecationWarning`s that are issued when running tests #2986

Author avatar pkhalaj wants to merge changes into pytroll:main from pkhalaj:fix/deprecation-warnings 1 fixed issue

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People think that computer science is the art of geniuses but the actual reality is the opposite, just many people doing things that build on each other, like a wall of mini stones.

            

            
– Donald Knuth