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MiCoNE
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.github\workflows\build.yml
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micone\pipelines\templates\network_inference\direct\spieceasi.R
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micone\pipelines\envs\micone-propr\post_install.sh
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env.yml
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micone\validation\__init__.py
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micone\pipelines\envs\micone-qiime2\post_install.sh
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micone\pipelines\workflows\ni\run.sh
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.readthedocs.yml
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micone\utils\__init__.py
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micone\pipelines\templates\tax_assignment\assign\train_classifier.sh
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micone\pipelines\templates\tax_assignment\assign\import_reads.sh
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.sourcery.yaml
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micone\pipelines\envs\micone-mldm\env.yml
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micone\pipelines\templates\otu_processing\export\biom2tsv.py
1 2 2
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micone\pipelines\templates\otu_processing\transform\group.py
1 2 6
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tests\test_micone.py
1 1 2
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tests\conversion\test_taxmetadata_converter.py
1 2 3
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micone\conversion\network_converter.py
1 2 2
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micone\pipelines\templates\network_inference\network\create_consensus.py
2 5 5
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tests\config\test_config.py
2 2 7