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MiCoNE
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A
micone\cli.py
28 9 3
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micone\pipelines\templates\sequence_processing\trimming\trimming_paired.R
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micone\pipelines\templates\denoise_cluster\chimera_checking\remove_chimeras.R
 3 2
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micone\pipelines\templates\tax_assignment\assign\add_md2biom.py
8 3 3
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micone\pipelines\__init__.py
 2 1
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micone\pipelines\templates\tax_assignment\assign\assign_taxonomy_naivebayes.sh
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micone\pipelines\templates\denoise_cluster\otu_assignment\cluster_closed_reference.sh
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micone\pipelines\templates\tax_assignment\assign\import_references.sh
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.pre-commit-config.yaml
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micone\pipelines\workflows\full\run.sh
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micone\pipelines\templates\denoise_cluster\otu_assignment\cluster_open_reference.sh
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micone\pipelines\workflows\op_ni\run.sh
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micone\pipelines\envs\micone-cozine\env.yml
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micone\pipelines\envs\micone-flashweave\post_install.sh
 3 1
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micone\pipelines\templates\network_inference\bootstrap\calculate_pvalues.sh
 3 1
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micone\pipelines\templates\network_inference\bootstrap\filter.py
5 1 4
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micone\logging\__init__.py
 1 1
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micone\pipelines\envs\micone-harmonies\env.yml
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micone\pipelines\templates\network_inference\bootstrap\resample.sh
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micone\pipelines\templates\network_inference\correlation\pearson.py
7 2 5