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ViroConstrictor
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Complexity
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A
setup.py
 13 -
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mkdocs.yml
 6 -
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env.yml
 21 -
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containers\tag_and_push_containers.py
 1 2
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containers\pull_published_containers.py
 1 -
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containers\convert_artifact_containers_for_apptainer.py
 1 1
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containers\build_containers.py
 1 2
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containers\add_OCI_to_docker_engine.py
 1 1
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build_local_containers.py
 2 4
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ViroConstrictor\workflow\wrappers\fastqc_wrapper.sh
 1 -
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ViroConstrictor\workflow\scripts\vcf_to_tsv.py
 2 -
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ViroConstrictor\workflow\scripts\prepare_refs.py
 1 -
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ViroConstrictor\workflow\scripts\match_ref\group_refs.py
 2 -
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ViroConstrictor\workflow\scripts\match_ref\filter_references.py
 1 -
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ViroConstrictor\workflow\scripts\match_ref\filter_gff.py
 1 -
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ViroConstrictor\workflow\scripts\match_ref\filter_best_matching_ref.py
 1 -
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ViroConstrictor\workflow\scripts\match_ref\filter_bed.py
 1 -
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ViroConstrictor\workflow\scripts\match_ref\count_mapped_reads.py
 1 -
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ViroConstrictor\workflow\scripts\group_aminoacids.py
 2 1
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ViroConstrictor\workflow\scripts\filter_bed_input.py
 4 -