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nf-ncov-voc
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modules\nf-core\minimap2\align\meta.yml
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modules\nf-core\samtools\view\meta.yml
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modules\nf-core\nextclade\run\meta.yml
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bin\splitmutationnames_gvf.py
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modules\nf-core\samtools\faidx\meta.yml
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subworkflows\nf-core\bam_sort_stats_samtools\meta.yml
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modules\nf-core\samtools\flagstat\meta.yml
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bin\harmonize_metadata.py
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modules\nf-core\samtools\index\meta.yml
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subworkflows\nf-core\bam_stats_samtools\meta.yml
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modules\nf-core\samtools\sort\meta.yml
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bin\ivar_variants_to_vcf.py
21 2 -
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subworkflows\nf-core\bam_variant_calling_sort_freebayes_bcftools\meta.yml
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bin\map_virusseq_GISAID.py
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bin\extract_metadata.py
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environments\environment.yml
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bin\archive\viralai_fetch_metadata.py
1 1 1
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bin\functions.py
66 22 1
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bin\gvf2tsv.py
43 29 1
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bin\surveillance_report_pdf.py
45 11 1